Dennis L. Chao

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Fred Hutchinson Cancer Research Center
Vaccine and Infectious Disease Institute
Staff ScientistAppointed: 2008

Mailing Address

1100 Fairview Ave N
LE-400
Seattle, Washington 98109
United States

Contact Information

dchao@fhcrc.org
http://www.cs.unm.edu/~dlchao

Qualifications

Ph.D., University of New Mexico, Computer Science, 2004.
B.S., Princeton University, Computer Science, 1994.

Expertise and Research Interests

Mathematical and computational modeling
Cancer biomarker discovery
Infectious disease modeling
C/C++ and Java programming

Keywords

COS Keywords:

Biomarkers, Cancer Or Carcinogenesis, Mathematical Modeling (Medical).

Additional Terms:

Infectious Diseases Or Agents.

Patents

Color-patch sheet registration, Patent Number: 6404517, 2002, Industry, United States of America.
On-line ink-duty reduction, Patent Number: 5799136, 1998, Industry, United States of America.

Publications

  • Chao DL, Sanchez CA, Galipeau PC, Blount PL, Paulson TG, Cowan DS, Ayub K, Odze RD, Rabinovitch PS, Reid BJ (Nov 2008) Cell Proliferation, Cell Cycle Abnormalities, and Cancer Outcome in Patients with Barrett's Esophagus: A Long-term Prospective Study., Clinical cancer research : an official journal of the American Association for Cancer Research, 14 (21), 6988-95 Abstract
  • Chao DL, Eck JT, Brash DE, Maley CC, Luebeck EG (Sep 2008) Preneoplastic lesion growth driven by the death of adjacent normal stem cells., Proceedings of the National Academy of Sciences of the United States of America Abstract
  • Galipeau PC, Chao DL, Li X, Arnaudo JD, Kissel HD, Sanchez CA, Reid BJ, Barrett's esophagus and esophageal adenocarcinoma epigenetic biomarker discovery using Infinium methylation, iCommunity Newsletter, San Diego, CA, Illumina, Inc, Feb 2008
  • Ribeiro RM, Perelson AS, Chao DL, Davenport MP (2007) HIV epidemiology and the impact of nonsterilizing vaccines, Proceedings of BIOMAT 2006: International Symposium on Mathematical and Computational Biology, Singapore, World Scientific Publishing, 69-88 pages
  • Chao DL, Maley CC, Wu X, Farrow DC, Galipeau PC, Sanchez CA, Paulson TG, Rabinovitch PS, Reid BJ, Spitz MR, Vaughan TL (Oct 2006) Mutagen sensitivity and neoplastic progression in patients with Barrett's esophagus: a prospective analysis., Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 15 (10), 1935-40 Abstract
  • Chao DL, Davenport MP, Forrest S, Perelson AS (Dec 2005) The effects of thymic selection on the range of T cell cross-reactivity., European journal of immunology, 35 (12), 3452-9 Abstract
  • Chao DL, Balthrop J, Forrest S (2005) Adaptive Radio: Achieving consensus using negative preferences, 2005 International ACM SIGGROUP Conference on Supporting Group Work, New York, ACM Press, 120-3 pages
  • Davenport MP, Ribeiro RM, Chao DL, Perelson AS (Oct 2004) Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus., Journal of virology, 78 (20), 11340-51 Abstract
  • D. L. Chao (2004) Computer games as interfaces, interactions, 11 (5), 71-2
  • Chao DL, Davenport MP, Forrest S, Perelson AS (May 2004) A stochastic model of cytotoxic T cell responses., Journal of theoretical biology, 228 (2), 227-40 Abstract
  • Chao DL, Davenport MP, Forrest S, Perelson AS (Feb 2004) Modelling the impact of antigen kinetics on T-cell activation and response., Immunology and cell biology, 82 (1), 55-61 Abstract
  • Chao DL, Forrest S (2003) Information immune systems, Genetic Programming and Evolvable Machines, 4 (4), 311-31
  • Chao DL, Davenport MP, Forrest S, Perelson AS (2003) Stochastic stage-structured modeling of the adaptive immune system., Proceedings / IEEE Computer Society Bioinformatics Conference. IEEE Computer Society Bioinformatics Conference, 2, 124-31 Abstract
  • Chao DL, Forrest S (2003) Generating biomorphs with an aesthetic immune system, Artificial Life VIII: Proceedings of the Eighth International Conference on the Simulation and Synthesis of Living Systems, Cambridge, Massachusetts, MIT Press, 89-92 pages
  • Chao DL, Forrest S (2002) Information immune systems, Proceedings of the First International Conference on Artificial Immune Systems, Canterbury, England, University of Kent at Canterbury Printing Unit, Canterbury,, 132-40 pages
  • Chao DL (2001) Doom as an interface for process management, Proceedings of the SIGCHI Conference on Human Factors in Computing Systems, New York, ACM Press, 152-7 pages
  • Chao DL, Levin SA (1999) Herding behavior: The emergence of large-scale phenomena from local interactions, Differential Equations with Applications to Biology, Fields Institute Communications, 21, 81-95
  • Wagner D, Brown MJF, Broun P, Cuevas W, Moses LE, Chao DL, Gordon DM (1998) Task-Related Differences in the Cuticular Hydrocarbon Composition of Harvester Ants, Pogonomyrmex barbatus, Journal of Chemical Ecology, 24 (12), 2021-37
  • Pascovici A, Li C, Shu J, Chao DL (1997) Ink reduction for cluster dot halftoning, Proceedings of the 1997 IS&T/SPIE International Symposium on Electronic Imaging Science and Technology, 293-9 pages

Profile Details

Last Updated: 11/6/2008

COS Expertise ID #1292779
Reference this profile directly: http://myprofile.cos.com/dlchao