Dr. Jonathan A. Cooper

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Fred Hutchinson Cancer Research Center
Basic Sciences
Member
Fred Hutchinson Cancer Research Center
Basic Sciences
Co-Associate Director
University of Washington
School of Medicine
Biochemistry
Affiliate Professor
Professional Headshot of Jonathan A. Cooper

Mailing Address

Fred Hutchinson Cancer Research Center, A2-025
1100 Fairview Avenue N.
Seattle, Washington 98109
United States

Contact Information

Phone: (206) 667-4454
Fax: (206) 667-6522
jcooper@fhcrc.org

Qualifications

Ph.D., University of Warwick, 1976.
B.A., University of Cambridge, 1973.

Expertise and Research Interests

Signaling Pathways in Development and Cancer

We are interested in the in vivo functions and mechanisms of action of adaptor proteins related to Drosophila Disabled, and in the signaling pathways used by Src, Fyn and other Src-family tyrosine kinases to regulate normal cell behavior and malignant transformation. We study these functions in cultured vertebrate cells and in genetically-engineered mice.

1. Disabled 1, Src family kinases and brain development

Disabled adaptor proteins contain a highly conserved PTB domain which binds to phosphoinositides (PIP2) and proteins that contain a FXNPXY sequence. Our studies in worms and mice show that Disabled proteins interact with cell surface receptors, and either regulate their subcellular localization or relay downstream signals. While not all interacting proteins have been identified, all Disabled proteins we have studied bind to transmembrane receptors related to the Low Density Lipoprotein (LDL) receptor. These receptors act as import carriers for various signaling molecules and nutrients, and some have signaling roles.

We have found that Disabled 1 (Dab1) is essential for normal neuron migrations during mammalian brain development. Two lipoprotein receptors expressed on CNS neurons have partially redundant roles in binding a signaling molecule called Reelin. Clustering of these receptors by Reelin induces the tyrosine phosphorylation of Dab1 in the neurons. Dab1 tyrosine phosphorylation, by Src and its close relative Fyn, is essential for proper migration of post-mitotic neurons before they undergo terminal differentiation. In mice that are mutant for Dab1, or for both Src and Fyn, the neurons differentiate in incorrect locations within the developing brain. This pathway also regulates dendrite development and synaptic plasticity later in life. We are characterizing the pathways that link Dab1, Src and Fyn to the migration machinery. One pathway involves PI3 kinase and Akt. Another involves the Crk and CrkL adaptor proteins and tyrosine phosphorylation of the C3G Rap1 guanine nucleotide exchange factor. We have evidence that Dab1 has two important functions: one is to activate Src and Fyn and the other is to act as a scaffold to assemble signaling complexes. Both functions are needed for normal development. We are also studying the mechanism that turns off signaling, and discovered a unique phenotype when pathway inactivation is prevented in vivo. We are using neuron cultures, in utero electroporation of DNA into developing fetal brain, and genetically-engineered mice to dissect the signaling mechanism and underlying cell biology further.

2. Disabled 2 and cellular transport

Disabled 2 (Dab2) is encoded by a gene that is down-regulated in many human cancers. Re-expression of Dab2 in cancer cell lines has been shown to cause apoptosis and slow cell proliferation. The mechanism of this is unknown. So far, the only in vivo function we can ascribe to Db2 is the endocytosis of lipoprotein receptors. Lipoprotein receptors frequently act as co-receptors or endocytic receptors for signaling molecules. For example, Megalin binds Sonic Hedgehog and BMP4. We found that Dab2 conditional knockout inhibits gastrulation and decreases endocytosis of Megalin in specific cell types. Dab2 is required in the visceral endoderm of the pregastrula embryo, later in the visceral yolk sac, and in the adult kidney proximal tubule for endocytosis of Megalin. Uptake of the LDL receptor in fibroblasts requires Dab2 if another adaptor, ARH is absent. Dab2 functions by binding to cell membranes, receptors, clathrin and accessory proteins that help form a clathrin-coated pit. We are currently screening for other proteins whose endocytosis requires Dab2. Changes in cell surface receptors may be responsible for the changes in Dab2 expression in cancer cells.

3. Src family kinases

In addition to uncovering the mechanism of Src and Fyn in regulating neuron migrations, we are also interested in the role of Src activation in cancer cells. Many human tumors have increased Src kinase activity. However, activating mutations in the Src gene, such as are found in Rous sarcoma virus, are exceedingly rare in human cancers. Indeed, activating mutations in any of the eight Src family kinase genes are virtually unknown in human samples. It seems likely that such mutations have both positive and negative effects on malignant transformation in vivo. We are developing mouse models to study the role of activating mutations in Src family kinases in cancer and development

Keywords

COS Keywords:

Biochemistry, Biochemistry, Proteins, Neurons.

Additional Terms:

Development, Endocytosis.

Previous Positions

1995-2000, Co-Director, University of Washington, Graduate Program in Molecular and Cellular Biology
1995-2000, Co-Director, Fred Hutchinson Cancer Research Center, Graduate Program in Molecular and Cellular Biology

Publications

  • Cooper JA, Qian H (Apr 2008) A Mechanism for Src Kinase-Dependent Signaling by Noncatalytic Receptors., Biochemistry Abstract
  • Cooper JA (Mar 2008) A mechanism for inside-out lamination in the neocortex., Trends in neurosciences, 31 (3), 113-9 Abstract
  • Walter RB, Häusermann P, Raden BW, Teckchandani AM, Kamikura DM, Bernstein ID, Cooper JA (Feb 2008) Phosphorylated ITIMs enable ubiquitylation of an inhibitory cell surface receptor., Traffic (Copenhagen, Denmark), 9 (2), 267-79 Abstract
  • Walter RB, Raden BW, Zeng R, Häusermann P, Bernstein ID, Cooper JA (Jan 2008) ITIM-dependent endocytosis of CD33-related Siglecs: role of intracellular domain, tyrosine phosphorylation, and the tyrosine phosphatases, Shp1 and Shp2., Journal of leukocyte biology, 83 (1), 200-11 Abstract
  • Feng L, Allen NS, Simo S, Cooper JA (Nov 2007) Cullin 5 regulates Dab1 protein levels and neuron positioning during cortical development., Genes & development, 21 (21), 2717-30 Abstract
  • Maurer ME, Cooper JA (Oct 2006) The adaptor protein Dab2 sorts LDL receptors into coated pits independently of AP-2 and ARH., Journal of cell science, 119 (Pt 20), 4235-46 Abstract
  • Kamikura DM, Cooper JA (Mar 2006) Clathrin interaction and subcellular localization of Ce-DAB-1, an adaptor for protein secretion in Caenorhabditis elegans., Traffic (Copenhagen, Denmark), 7 (3), 324-36 Abstract
  • Maurer ME, Cooper JA (Nov 2005) Endocytosis of megalin by visceral endoderm cells requires the Dab2 adaptor protein., Journal of cell science, 118 (Pt 22), 5345-55 Abstract
  • Xu M, Arnaud L, Cooper JA (Oct 2005) Both the phosphoinositide and receptor binding activities of Dab1 are required for Reelin-stimulated Dab1 tyrosine phosphorylation., Brain Research. Molecular Brain Research, 139 (2), 300-5 Abstract
  • Brown MC, Cary LA, Jamieson JS, Cooper JA, Turner CE (Sep 2005) Src and FAK kinases cooperate to phosphorylate paxillin kinase linker, stimulate its focal adhesion localization, and regulate cell spreading and protrusiveness., Molecular Biology of the Cell, 16 (9), 4316-28 Abstract
  • Kuo G, Arnaud L, Kronstad-O'Brien P, Cooper JA (Sep 2005) Absence of Fyn and Src causes a reeler-like phenotype., The Journal of Neuroscience : the Official Journal of the Society for Neuroscience., 25 (37), 8578-86 Abstract
  • Nagai J, Christensen EI, Morris SM, Willnow TE, Cooper JA, Nielsen R (Sep 2005) Mutually dependent localization of megalin and Dab2 in the renal proximal tubule., American Journal of Physiology. Renal Physiology, 289 (3), F569-76 Abstract
  • Walter RB, Raden BW, Kamikura DM, Cooper JA, Bernstein ID (Feb 2005) Influence of CD33 expression levels and ITIM-dependent internalization on gemtuzumab ozogamicin-induced cytotoxicity., Blood, 105 (3), 1295-302 Abstract
  • Arthur WT, Quilliam LA, Cooper JA (Oct 2004) Rap1 promotes cell spreading by localizing Rac guanine nucleotide exchange factors., The Journal of Cell Biology, 167 (1), 111-22 Abstract
  • Orton KC, Ling J, Waskiewicz AJ, Cooper JA, Merrick WC, Korneeva NL, Rhoads RE, Sonenberg N, Traugh JA (Sep 2004) Phosphorylation of Mnk1 by caspase-activated Pak2/gamma-PAK inhibits phosphorylation and interaction of eIF4G with Mnk., The Journal of Biological Chemistry, 279 (37), 38649-57 Abstract
  • Herrick TM, Cooper JA (Jul 2004) High affinity binding of Dab1 to Reelin receptors promotes normal positioning of upper layer cortical plate neurons., Brain Research. Molecular Brain Research, 126 (2), 121-8 Abstract
  • Ballif BA, Arnaud L, Arthur WT, Guris D, Imamoto A, Cooper JA, Activation of a Dab1/CrkL/C3G/Rap1 pathway in Reelin-stimulated neurons, Current Biology, 14(7), 606-10, April 2004 Abstract
  • Chibazakura T, McGrew SG, Cooper JA, Yoshikawa H, Roberts JM (Mar 2004) Regulation of cyclin-dependent kinase activity during mitotic exit and maintenance of genome stability by p21, p27, and p107., Proceedings of the National Academy of Sciences of the United States of America., 101 (13), 4465-70 Abstract
  • Arnaud L, Ballif BA, Cooper JA, Regulation of protein tyrosine kinase signaling by substrate degradation during brain development, Molecular and Cellular Biology, 23(24), 9293-302, December 2003 Abstract
  • Kamikura DM, Cooper JA, Lipoprotein receptors and a disabled family cytoplasmic adaptor protein regulate EGL-17/FGF export in C. elegans, Genes & Development, 17(22), 2798-811, November 2003 Abstract
  • Ballif BA, Arnaud L, Cooper JA, Tyrosine phosphorylation of Disabled-1 is essential for Reelin-stimulated activation of Akt and Src family kinases, Brain Research. Molecular Brain Research, 117(2), 152-9, October 2003 Abstract
  • Mukherjee A, Arnaud L, Cooper JA, Lipid-dependent Recruitment of Neuronal Src to Lipid Rafts in the Brain, Journal of Biological Chemistry, 278(42), 40806-14, October 2003 Abstract
  • Hocevar BA, Mou F, Rennolds JL, Morris SM, Cooper JA, Howe PH, Regulation of the Wnt signaling pathway by disabled-2 (Dab2), The Embo Journal, 22(12), 3084-94, June 2003 Abstract
  • Brich J, Shie FS, Howell BW, Li R, Tus K, Wakeland EK, Jin LW, Mumby M, Churchill G, Herz J, Cooper JA, Genetic modulation of tau phosphorylation in the mouse, The Journal of Neuroscience: The Official Journal of the Society for Neuroscience, 23(1), 187-92, January 2003
  • Arnaud L, Ballif BA, Forster E, Cooper JA, Fyn Tyrosine Kinase Is a Critical Regulator of Disabled-1 during Brain Development, Current Biology: Cb, 13(1), 9-17, January 2003
  • Chaudhary A, Brugge JS, Cooper JA, Direct phosphorylation of focal adhesion kinase by c-Src: Evidence using a modified nucleotide pocket kinase and ATP analog, Biochemical and Biophysical Research Communications, 294(2), 293-300, June 2002
  • Morris SM, Arden SD, Roberts RC, Kendrick-Jones J, Cooper JA, Luzio JP, Buss F, Myosin VI binds to and localises with Dab2, potentially linking receptor-mediated endocytosis and the actin cytoskeleton, Traffic, 3(5), 331-41, May 2002
  • Morris SM, Tallquist MD, Rock CO, Cooper JA, Dual roles for the Dab2 adaptor protein in embryonic development and kidney transport, The Embo Journal, 21(7), 1555-64, April 2002 Abstract
  • Cary LA, Klinghoffer RA, Sachsenmaier C, Cooper JA, SRC catalytic but not scaffolding function is needed for integrin-regulated tyrosine phosphorylation, cell migration, and cell spreading, Molecular and Cellular Biology, 22(8), 2427-40, April 2002 Abstract
  • Herrick TM, Cooper JA, A hypomorphic allele of dab1 reveals regional differences in reelin-Dab1 signaling during brain development, Development (Cambridge, England), 129(3), 787-96, February 2002
  • Park C, Finger JH, Cooper JA, Ackerman SL, The cerebellar deficient folia (cdf) gene acts intrinsically in Purkinje cell migrations, Genesis, 32(1), 32-41, January 2002
  • Morris SM, Cooper JA, Disabled-2 colocalizes with the LDLR in clathrin-coated pits and interacts with AP-2, Traffic, 2(2), 111-23, February 2001
  • Cary LA, Cooper JA, Molecular switches in lipid rafts, Nature, 404(6781), 945-947, April 2000
  • Randazzo PA, Andrade J, Miura K, Brown MT, Long YQ, Stauffer S, Roller P, Cooper JA, The Arf GTPase-activating protein ASAP1 regulates the actin cytoskeleton, Proceedings of the National Academy of Sciences (USA), 97(8), 4011-6, April 2000 Abstract
  • Howell BW, Herrick TM, Hildebrand J, Zhang Y, Cooper JA, Dab1 tyrosine phosphorylation sites relay positional signals during mouse brain development, Current Biology, 10, 877-885, 2000
  • Hiesberger T, Trommsdorff M, Howell BW, Goffinet A, Mumby MC, Cooper JA, Herz J, Direct binding of Reelin to VLDL receptor and ApoE receptor 2 induces tyrosine phosphorylation of disabled-1 and modulates tau phosphorylation, Neuron, 24(2), 481-9, October 1999 Abstract
  • Howell BW, Lanier LM, Frank R, Gertler FB, Cooper JA, The disabled 1 phosphotyrosine-binding domain binds to the internalization signals of transmembrane glycoproteins and to phospholipids, Molecular and Cellular Biology, 19(7), 5179-88, July 1999 Abstract
  • Cooper JA, Howell BW, Lipoprotein receptors: Signaling functions in the brain?, Cell, 97(6), 671-4, June 1999
  • Sachsenmaier C, Sadowski HB, Cooper JA, STAT activation by the PDGF receptor requires juxtamembrane phosphorylation sites but not Src tyrosine kinase activation, Oncogene, 18(24), 3583-92, June 1999 Abstract
  • Holland PM, Cooper JA, Protein modification: docking sites for kinases, Current Biology, 9(9), R329-31, May 1999 Abstract
  • Klinghoffer RA, Sachsenmaier C, Cooper JA, Soriano P, Src family kinases are required for integrin but not PDGFR signal transduction, Embo Journal, 18(9), 2459-71, May 1999 Abstract
  • Waskiewicz AJ, Johnson JC, Penn B, Mahalingam M, Kimball SR, Cooper JA, Phosphorylation of the cap-binding protein eukaryotic translation initiation factor 4E by protein kinase Mnk1 in vivo, Molecular and Cellular Biology, 19(3), 1871-80, March 1999 Abstract
  • Howell BW, Herrick TM, Cooper JA, Reelin-induced tyrosine phosphorylation of disabled 1 during neuronal positioning, Genes and Development, 13(6), 643-8, March 1999 Abstract
  • Brown MT, Andrade J, Radhakrishna H, Donaldson JG, Cooper JA, Randazzo PA, ASAP1, a phospholipid-dependent arf GTPase-activating protein that associates with and is phosphorylated by Src, Molecular and Cellular Biology, 18(12), 7038-51, December 1998 Abstract
  • Gallagher E, Howell BW, Soriano P, Cooper JA, Hawkes R, Cerebellar abnormalities in the disabled (mdab1-1) mouse, Journal of Comparative Neurology, 402(2), 238-51, December 1998 Abstract
  • Megidish T, Cooper J, Zhang L, Fu H, Hakomori S, A novel sphingosine-dependent protein kinase (SDK1) specifically phosphorylates certain isoforms of 14-3-3 protein, Journal of Biological Chemistry, 273(34), 21834-45, 21 Aug 1998
  • Gotoh Y, Cooper JA, Reactive oxygen species- and dimerization-induced activation of apoptosis signal-regulating kinase 1 in tumor necrosis factor-alpha signal transduction, Journal of Biological Chemistry, 273(28), 17477-82, 1998 Abstract
  • Winkler DG, Cutler RE Jr, Drugan JK, Campbell S, Morrison DK, Cooper JA, Identification of residues in the cysteine-rich domain of Raf-1 that control Ras binding and Raf-1 activity, Journal of Biological Chemistry, 273(34), 21578-84, 1998 Abstract
  • Holland PM, Suzanne M, Campbell JS, Noselli S, Cooper JA, MKK7 is A stress-activated mitogen-activated protein kinase kinase functionally related to hemipterous, Journal of Biological Chemistry, 272(40), 24994-8, October 1997 Abstract
  • Howell BW, Hawkes R, Soriano P, Cooper JA, Neuronal position in the developing brain is regulated by mouse disabled-1, Nature, 389(6652), 733-7, October 1997 Abstract
  • Winkler DG, Johnson JC, Cooper JA, Vojtek AB, Identification and characterization of mutations in Ha-Ras that selectively decrease binding to cRaf-1, Journal of Biological Chemistry, 272(39), 24402-9, September 1997 Abstract
  • Waskiewicz AJ, Flynn A, Proud CG, Cooper JA, Mitogen-activated protein kinases activate the serine/threonine kinases Mnk1 and Mnk2, Embo Journal, 16(8), 1909-20, April 1997 Abstract
  • Chen M, Li D, Krebs EG, Cooper JA, The casein kinase II beta subunit binds to Mos and inhibits Mos activity, Molecular and Cellular Biology, 17(4), 1904-12, April 1997 Abstract
  • Zaitsevskaya-Carter T, Cooper JA, Spm1, a stress-activated MAP kinase that regulates morphogenesis in S.pombe, Embo Journal, 16(6), 1318-31, March 1997 Abstract
  • Howell BW, Gertler FB, Cooper JA, Mouse disabled (mDab1): a Src binding protein implicated in neuronal development, Embo Journal, 16(1), 121-32, January 1997 Abstract
  • Sheldon M, Rice DS, D'Arcangelo G, Yoneshima H, Nakajima K, Mikoshiba K, Howell BW, Cooper JA, Goldowitz D, Curran T, Scrambler and yotari disrupt the disabled gene and produce a reeler-like phenotype in mice, Nature, 389(6652), 730-3, 1997
  • Chen M, Cooper JA, The beta subunit of CKII negatively regulates Xenopus oocyte maturation, Proceedings of the National Academy of Sciences (USA), 94(17), 9136-40, 1997
  • Cooper JA, Simon MA, Kussick SJ, Signaling by ectopically expressed Drosophila Src64 requires the protein-tyrosine phosphatase corkscrew and the adapter downstream of receptor kinases, Cell Growth and Differentiation, 7(11), 1435-41, November 1996 Abstract
  • Brown MT, Cooper JA, Regulation, substrates and functions of src, Biochimica Et Biophysica Acta, 1287(2-3), 121-49, June 1996 Abstract
  • Keegan K, Cooper JA, Use of the two hybrid system to detect the association of the protein-tyrosine-phosphatase, SHPTP2, with another SH2-containing protein, Grb7, Oncogene, 12(7), 1537-44, April 1996 Abstract
  • Howell BW, Cooper JA, Csk suppression of Src involves movement of Csk to sites of Src activity, Molecular and Cellular Biology, 14(8), 5402-11, August 1994 Abstract
  • Fabian JR, Vojtek AB, Cooper JA, Morrison DK, A single amino acid change in Raf-1 inhibits Ras binding and alters Raf-1 function, Proceedings of the National Academy of Sciences (USA), 91(13), 5982-6, June 1994 Abstract
  • Li W, Nishimura R, Kashishian A, Batzer AG, Kim WJ, Cooper JA, Schlessinger J, A new function for a phosphotyrosine phosphatase: linking GRB2-Sos to a receptor tyrosine kinase, Molecular and Cellular Biology, 14(1), 509-17, January 1994 Abstract
  • Kussick SJ, Basler K, Cooper JA, Ras1-dependent signaling by ectopically-expressed Drosophila src gene product in the embryo and developing eye, Oncogene, 8(10), 2791-803, October 1993 Abstract
  • Vojtek AB, Cooper JA, Identification and characterization of a cDNA encoding mouse CAP: a homolog of the yeast adenylyl cyclase associated protein, Journal of Cell Science, 105 ( Pt 3), 777-85, July 1993 Abstract
  • Vojtek AB, Hollenberg SM, Cooper JA, Mammalian Ras interacts directly with the serine/threonine kinase Raf, Cell, 74(1), 205-14, July 1993 Abstract
  • Posada J, Yew N, Ahn NG, Vande Woude GF, Cooper JA, Mos stimulates MAP kinase in Xenopus oocytes and activates a MAP kinase kinase in vitro, Molecular and Cellular Biology, 13(4), 2546-53, April 1993 Abstract
  • Kashishian A, Cooper JA, Phosphorylation sites at the C-terminus of the platelet-derived growth factor receptor bind phospholipase C gamma 1, Molecular Biology of the Cell, 4(1), 49-57, January 1993 Abstract
  • Posada J, Cooper JA, Requirements for phosphorylation of MAP kinase during meiosis in Xenopus oocytes, Science, 255(5041), 212-5, January 1992 Abstract
  • Nada S, Okada M, MacAuley A, Cooper JA, Nakagawa H, Cloning of a complementary DNA for a protein-tyrosine kinase that specifically phosphorylates a negative regulatory site of p60c-src, Nature, 351(6321), 69-72, May 1991 Abstract
  • Posada J, Sanghera J, Pelech S, Aebersold R, Cooper JA, Tyrosine phosphorylation and activation of homologous protein kinases during oocyte maturation and mitogenic activation of fibroblasts, Molecular and Cellular Biology, 11(5), 2517-28, May 1991 Abstract
  • Kazlauskas A, Cooper JA, Phosphorylation of the PDGF receptor beta subunit creates a tight binding site for phosphatidylinositol 3 kinase, Embo Journal, 9(10), 3279-86, October 1990 Abstract
  • Kazlauskas A, Ellis C, Pawson T, Cooper JA, Binding of GAP to activated PDGF receptors, Science, 247(4950), 1578-81, March 1990 Abstract
  • Kazlauskas A, Cooper JA, Autophosphorylation of the PDGF receptor in the kinase insert region regulates interactions with cell proteins, Cell, 58(6), 1121-33, September 1989 Abstract
  • Cooper JA, MacAuley A, Potential positive and negative autoregulation of p60c-src by intermolecular autophosphorylation, Proceedings of the National Academy of Sciences (USA), 85(12), 4232-6, June 1988 Abstract
  • Cooper JA, Gould KL, Cartwright CA, Hunter T, Tyr527 is phosphorylated in pp60c-src: Implications for regulation, Science, 231(4744), 1431-4, March 1986

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Last Updated: 5/13/2008

COS Expertise ID #441205
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