Dr. A. Daniel Jones

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Michigan State University
Biochemistry & Molecular Biology and Chemistry
ProfessorAppointed: 2005

Mailing Address

212 Biochemistry
Dept. of Biochemistry & Molecular Biology
Michigan State University
East Lansing, Michigan 48824
United States

Contact Information

Phone: (517) 432-7126
Fax: (517) 353-9334
jonesar4@msu.edu

Qualifications

Ph.D., Pennsylvania State University, Chemistry, 1984.
B.S., Harvey Mudd College, Chemistry, 1976.

Expertise and Research Interests

Mass spectrometry, separations, and analytical chemistry
Analytical strategies for metabolomics and metabolite profiling
Posttranslational modification of proteins in aging, toxicity, and disease
Chemical ecology
Plant-insect and plant-pathogen interactions
High-throughput techniques for discovery of bioactive natural products

Keywords

COS Keywords:

Analytical Chemistry, Chemical Sciences, Mass Spectrometry, Natural Products, Proteomics, Toxicology, Xenobiotics.

Additional Terms:

Lipidomics, Mass Spectrometry, Metabolomics, Proteomics.

Memberships

American Chemical Society
American Society for Mass Spectrometry

Honors and Awards

1996-1996, James H. Meyer Distinguished Achievement Award, University of California, Davis, University of California, Davis

Previous Positions

1998-2005, Senior Scientist, Pennsylvania State University, Science, Eberly, Chemistry
1990-1993, Assistant Adjunct Professor, University of California, Davis, School of Veterinary Medicine, Molecular Biosciences
1989-1998, Academic Administrator and Director, University of California, Davis, Facility for Advanced Instrumentation
1984-1984, Visiting Assistant Professor, Harvey Mudd College, Chemistry
1984-1989, Assistant Research Spectroscopist and Acting Director, University of California, Davis, Facility for Advanced Instrumentation

Patents

Inhibition of Glutathione Transferase by Haloenol Lactones, Patent Number: 6103665, 2000, Institution-owned, United States.
Inhibition of Glutathione Transferase by Haloenol Lactones, Patent Number: 5767147, 1998, Institution-owned, United States.
Inhibition of Glutathione Transferase by Haloenol Lactones, Patent Number: 6495370, Institution-owned, United States.

Publications

  • Denkenberger, K. A., Bowers, R. A., Jones, A. D., Mueller, K. T. (2007) NMR studies of the thermal degradation of a perfluoropolyether on the surfaces of γ-alumina and kaolinite, Langmuir, 23, 8855-8860
  • Turich, C., Freeman, K. H., Bruns, M. A., Conte, M., Jones, A. D., Wakeham, S. G. (2007) Lipids of marine Archaea: patterns and provenance in the water-column and sediments, Geochimica et Cosmochimica Acta, 71, 3272-3291
  • Kuldau, G., Mansfield, M., Archibald, D., Jones, A. D. (2007) Relationship of sphinganine analog mycotoxin contamination in maize silage to seasonal weather conditions, and agronomic and ensiling practices, Phytopathology, 94, 505-511
  • Last, R. L., Jones, A. D., Shachar-Hill, Y. (2007) Towards the plant metabolome and beyond, Nature Reviews Molecular Cell Biology, 8, 167-174
  • Ishmael, S. S., Ishmael, F. T., Jones, A. D., Bond, J. S. (2006) Protease domain glycans affect oligomerization, disulfide bond formation, and stability of the meprin A metalloprotease homo-oligomer, Journal of Biological Chemistry, 281, 37404-37415
  • Wang, Y., Scherperel, G., Roberts, K. D., Jones, A. D., Reid, G. E., Yan, H. (2006) A point mutation converts dihydroneopterin aldolase to a cofactor-independent oxygenase, Journal of the American Chemical Society, 128, 13216-13223
  • Chen, H., Jones, A. D., Howe, G. A. (2006) Constitutive activation of the jasmonate signaling pathway enhances the production of secondary metabolites in tomato, FEBS Letters, 580 (11), 2540-2546
  • Bell, D. S., Cramer, H. M., Jones, A. D. (2005) Rational method development strategies on a fluorinated stationary phase: mobile phase ionic concentration and temperature effects on the separation of ephedrine alkaloids, Journal of Chromatography A, 1095 (1-2), 113-118
  • Lame', M. W., Jones, A. D., Wilson, D. W., Segall, H. J. (2005) Monocrotaline pyrrole targets proteins with and without cysteine residues in the cytosol and membranes of human pulmonary artery endothelial cells, Proteomics, 5 (17), 4398-4413
  • Manda, K., Hammer, E., Mikolasch, A., Niedermayer, T., Dec, J., Jones, A. D., Benesi, A. J., Schauer, F., Bollag, J.-M. (2005) Laccase-induced cross-coupling of 4-aminobenzoic acid with 2,5-dihydroxy-N-(2-hydroxyethyl)benzamide and 2,5-dihydroxybenzoic acid methyl ester, Journal of Molecular Catalysis B: Enzymatic, 35 (4-6), 86-92
  • Boddu J, Svabek C, Ibraheem F, Jones AD, Chopra S, Characterization of a Deletion Allele of a Sorghum Myb Gene, Yellow Seed1 Showing Loss of 3-deoxyflavonoids, Plant Science, 169(3), 542-552, Sep 2005
  • Bell DS, Jones AD, Solute Attributes and Molecular Interactions Contributing to "U-shape" Retention on a Fluorinated High-performance Liquid Chromatography Stationary Phase, Journal of Chromatography a, 1073(1-2), 99-109, 6 May 2005
  • Strynar M, Dec J, Benesi A, Jones AD, Fry RA, Bollag JM, Using 19F NMR Spectroscopy to Determine Trifluralin Binding to Soil., Environmental Science & Technology, 38(24), 6645-55, Dec 2004 Abstract
  • Coleman CS, Stanley BA, Jones AD, Pegg AE, Spermidine/spermine-N-1-acetyltransferase-2 (SSAT2) Acetylates Thialysine and Is Not Involved in Polyamine Metabolism, Biochemical Journal, 384(1), 139-148, 15 Nov 2004
  • Repeta DJ, Hartman NT, John S, Jones AD, Goericke R, Structure Elucidation and Characterization of Polychlorinated Biphenyl Carboxylic Acids As Major Constituents of Chromophoric Dissolved Organic Matter in Seawater., Environmental Science & Technology, 38(20), 5373-8, Oct 2004 Abstract
  • Frigaard NU, Maresca JA, Yunker CE, Jones AD, Bryant DA, Genetic Manipulation of Carotenoid Biosynthesis in the Green Sulfur Bacterium Chlorobium Tepidum., Journal of Bacteriology, 186(16), 5210-20, Aug 2004 Abstract
  • Boddu J, Svabek C, Sekhon R, Gevens A, Nicholson RL, Jones AD, Pedersen JF, Gustine DL, Chopra S, Expression of a Putative Flavonoid 3'-hydroxylase in Sorghum Mesocotyls Synthesizing 3-deoxyanthocyanidin Phytoalexins, Physiological and Molecular Plant Pathology, 65(2), 101-113, Aug 2004
  • Manica DP, Lapos JA, Jones AD, Ewing AG, Analysis of the Stability of Amino Acids Derivatized With Naphthalene-2,3-dicarboxaldehyde Using High-performance Liquid Chromatography and Mass Spectrometry., Analytical Biochemistry, 322(1), 68-78, Nov 2003 Abstract
  • Ramamurthy B, Jones AD, Larsson L, Glutathione reverses early effects of glycation on myosin function, American Journal of Physiology. Cell Physiology, 285(2), C419-24, August 2003 Abstract
  • Li LC, Bedinger PA, Volk C, Jones AD, Cosgrove DJ, Purification and characterization of four beta-expansins (Zea m 1 isoforms) from maize pollen, Plant Physiology, 132(4), 2073-85, August 2003 Abstract
  • Dubey AK, Baker CS, Suzuki K, Jones AD, Pandit P, Romeo T, Babitzke P, CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript, Journal of Bacteriology, 185(15), 4450-60, August 2003 Abstract
  • Lame MW, Jones AD, Wilson DW, Segall HJ, Protein Targets of 1,4-benzoquinone and 1,4-naphthoquinone in Human Bronchial Epithelial Cells., Proteomics, 3(4), 479-95, Apr 2003 Abstract
  • Johnson TW, Naithani S, Stewart Jr C, Zybailov B, Jones AD, Golbeck JH, Chitnis PR, The MenD and MenE Homologs Code for 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylate Synthase and O-succinylbenzoic Acid-CoA Synthase in the Phylloquinone Biosynthetic Pathway of Synechocystis Sp. PCC6803, Biochimica Et Biophysica Acta-Bioenergetics, 1557(1-3), 67-76, 6 Mar 2003
  • Park S, Meyer M, Jones AD, Yennawar HP, Yennawar NH, Nixon BT, Two-component signaling in the AAA + ATPase DctD: binding Mg2+ and BeF3- selects between alternate dimeric states of the receiver domain, The Faseb Journal : Official Publication of the Federation of American Societies for Experimental Biology., 16(14), 1964-6, December 2002 Abstract
  • Wheelock CE, Colvin ME, Uemura I, Olmstead MM, Sanborn JR, Nakagawa Y, Jones AD, Hammock BD, Use of ab initio calculations to predict the biological potency of carboxylesterase inhibitors, Journal of Medicinal Chemistry, 45(25), 5576-93, December 2002 Abstract
  • Schrick B, Blough JL, Jones AD, Mallouk TE, Hydrodechlorination of Trichloroethylene to Hydrocarbons Using Bimetallic Nickel-iron Nanoparticles, Chemistry of Materials, 14(12), 5140-5147, Dec 2002
  • Park S, Zhang H, Jones AD, Nixon BT, Biochemical evidence for multiple dimeric states of the Sinorhizobium meliloti DctD receiver domain, Biochemistry, 41(36), 10934-41, September 2002 Abstract
  • Vu BC, Jones AD, Lecomte JT, Novel histidine-heme covalent linkage in a hemoglobin, Journal of the American Chemical Society, 124(29), 8544-5, July 2002 Abstract
  • Lin Y, Dueker SR, Jones AD, Clifford AJ, A parallel processing solid phase extraction protocol for the determination of whole blood folate, Analytical Biochemistry, 301(1), 14-20, February 2002 Abstract
  • Sakuragi Y, Zybailov B, Shen G, Jones AD, Chitnis PR, van der Est A, Bittl R, Zech S, Stehlik D, Golbeck JH, Bryant DA, Insertional inactivation of the menG gene, encoding 2-phytyl-1,4-naphthoquinone methyltransferase of Synechocystis sp. PCC 6803, results in the incorporation of 2-phytyl-1,4-naphthoquinone into the A(, Biochemistry, 41(1), 394-405, January 2002 Abstract
  • Ramamurthy B, Hook P, Jones AD, Larsson L, Changes in myosin structure and function in response to glycation, The Faseb Journal : Official Publication of the Federation of American Societies for Experimental Biology., 15(13), 2415-22, November 2001 Abstract
  • Alley SC, Trakselis MA, Mayer MU, Ishmael FT, Jones AD, Benkovic SJ, Building a replisome solution structure by elucidation of protein-protein interactions in the bacteriophage T4 DNA polymerase holoenzyme, Journal of Bioligical Chemistry, 276(42), 39340-9, October 2001 Abstract
  • Johnson TW, Zybailov B, Jones AD, Bittl R, Zech S, Stehlik D, Golbeck JH, Chitnis PR, Recruitment of a foreign quinone into the A1 site of photosystem I. In vivo replacement of plastoquinone-9 by media-supplemented naphthoquinones in phylloquinone biosynthetic pathway mutan, Journal of Bioligical Chemistry, 276(43), 39512-21, October 2001 Abstract
  • Scott CP, Abel-Santos E, Jones AD, Benkovic SJ, Structural requirements for the biosynthesis of backbone cyclic peptide libraries, Chemistry & Biology, 8(8), 801-15, August 2001 Abstract
  • Mester T, Ambert-Balay K, Ciofi-Baffoni S, Banci L, Jones AD, Tien M, Oxidation of a tetrameric nonphenolic lignin model compound by lignin peroxidase, Journal of Bioligical Chemistry, 276(25), 22985-90, June 2001 Abstract
  • Cuiffi JD, Hayes DJ, Fonash SJ, Brown KN, Jones AD, Desorption-ionization mass spectrometry using deposited nanostructured silicon films, Analytical Chemistry, 73(6), 1292-5, March 2001 Abstract

Profile Details

Last Updated: 9/9/2007

COS Expertise ID #1088979
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