Dr. Pradeep Chowriappa |
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Louisiana Tech University College of Engineering and Science Computer Science Research Associate |  |
Mailing AddressComputer Science Department College of Engineering and Science Louisiana Tech University Ruston, Louisiana 71270United States | Contact Information |
Keywords
COS Keywords:
Bioinformatics, Computer and Information Sciences, Data Mining, Protein Folding,Additional Terms:
Bioinformatics, Data Mining, Protein Folding, Protein Sequence Matching, Protein Structural Matching.Honors and Awards
2007-2008,
8th Annual Student Research Symposium,
Louisiana Tech University,
Protein Structure Classification based on Conserved Hydrophobic Residues
Best Paper,
BIOT 2008,
University of Texas at Arlington
Publications
- Sumeet Dua, Pradeep Chowriappa (2009) Prediction of Enzyme Classes using Spectral based AA Information, 12th International Conference on Information Technology, Tata McGraw Hill, In Press
- Pradeep Chowriappa, Sumeet Dua, Jinko Kanno, Hilary Thompson (2009) Protein Structure Classification Based on Conserved Hydrophobic Residues, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (4), 639-651
- Harpreet Singh, Pradeep Chowriappa, Sumeet Dua (2009) Multi-domain Protein Family Classification Using Isomorphic Inter-property Relationships, Contemporary Computing: Communications in Computer and Information Science, Springer Berlin Heidelberg, 473-484 pages, ISBN=978-3-642-035 (bookchapter)
- Pradeep Chowriappa, Sumeet Dua, Hilary Thompson, Predicting Conformational Changes in Proteins Based on Hydrophobic Cores, NSF EPSCoR Research Infrastructure Improvement Annual Meeting, 11 May 2009
- Alan E. Alex, Pradeep Chowriappa, Sumeet Dua, Hilary W. Thompson, An Information Fusion Tool for Feature Integration in Synchronized Environments, NSF EPSCoR Research Infrastructure Improvement Annual Meeting, 11 May 2009
- Pradeep Chowriappa, Christian Clement, Sumeet Dua, James Hill, Hilary W. Thompson, Donna Neumann, Physico-chemical Property Analysis Tool for Assessment of Protein Domain Conservation, NSF EPSCoR Research Infrastructure Improvement Annual Meeting, 11 May 2009
- Sumeet Dua, Pradeep Chowrippa (2009) Protein Maps: Physico-chemical Properties Integration for Functional Annotation of Proteins, 7th Asia-Pacific Bioinformatics Conference, The Asia Pacific Bioinformatics Conference (APBC), BMC Bioinformatics
- Sumeet Dua, Pradeep Chowriappa, Alan E. Alex (2009) Ranking through Integration of Protein-Similarity for Identification of Cell-Cyclic Genes, International Journal of Bioinformatics Research and Applications (IJBRA), In Press
- Alan E. Alex, Sumeet Dua, Pradeep Chowriappa (15-17 Sept. 2008) Gene Ranking through the Integration of Synchronization Experiments, Computational Intelligence in Bioinformatics and Computational Biology, 2008. CIBCB '08. IEEE Symposium on, IEEE and IEEE Computational Intelligence Society, ISBN: 978-1-4244-1778-0, 136-142 pages, In Press
- Sumeet Dua, Pradeep Chowriappa, Alan E. Alex (2008) Ranking through Integration of Protein-similarity for Identification of Cell-cyclic Genes, Biotechnology and Bioinformatics Symposium (BIOT-2008), BIOT
- Sumeet Dua, Pradeep Chowriappa, Alan Edward Alex (2008) Isomorphic mining of gene relationships for integrated discovery, MCBIOS 2008, (Presented) Mid-South Computational Biology and Bioinformatics Society
- Sumeet Dua, Pradeep Chowriappa (2008) Protein Maps: Physico-Chemical properties Integration for Functional Annotation of Proteins, ICIP 2008, IEEE International Conference on Image Processing, Submitted
- Sumeet Dua, Pradeep Chowriappa, Ramakrishnan Rajagopalan (2007) Spectral Coherence Feature Extraction from Stereochemical Scales for Protein Classification, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Submitted
- S.Dua, Pradeep Chowriappa (Feb 9th, 2007) Functional Classification of Proteins Using a Novel Fractal-Based Approach, 24th Annual Houston Conference on Biomedical Engineering Research, Houston Society for Engineering in Medicine and Biology
- Sumeet Dua, Pradeep Chowriappa, Ramakrishnan Rajagopalan (2006) Computational Prediction of Protein Structure Using Supervised Classification (Poster), International Symposium on Computational Biology ISBB, Silicon Institute of Technology
- Sumeet Dua, Pradeep Chowriappa, Ramakrishnana Rajagopalan (2006) (Poster) Novel Protein Structural Classification by Discovering Coherence in Hydrophobicity Scales, 14th Annual International Conference On Intelligent Systems For Molecular Biology, Fortaleza, Brazil, ISMB-2006
- Sumeet Dua, Pradeep Chowriappa, Ramakrishnan Rajagopalan (2006) Computational Prediction of Protein Structure using Self-similarity based Classification, International Symposium on Computational Biology and Bioinformatics
- Pradeep Chowriappa, Sumeet Dua, Ramakrishnan Rajagopalan (2006) Computational Prediction of Protein Secondary Structures using Supervised Classification, 23rd Annual Houston Conference on Biomedical Engineering Research, Houston, Texas, Houston Society for Engineering in Medicine and Biology, 3 pages
- Sumeet Dua, Naveen Kandiraju, Pradeep Chowriappa, Region Quad-tree Decomposition Based Edge Detection for Medical Images, The Open Medical Informatics Journal, In Press
Memberships
IEEE Computer Society
ISCB- International Society of Computational Biology
Sigma Xi
Qualifications
Ph.D., Louisiana Tech University, Computational Analysis and Modeling, 2008.
Masters of Computer Applicatio, University of Madras, Computer Science, 2003.
Bachelors of Science and Engin, Loyola Academy, Computer Science and Engineering, 2000.
Expertise and Research Interests
Using Data Mining for the computational Prediction of Protein Folding using:
Structural, Sequence information and Physico chemical factors
Understanding Evolutionary conservation of sequential properties across Homologous Proteins for effective functional annotation of proteins
Structural, Sequence information and Physico chemical factors
Understanding Evolutionary conservation of sequential properties across Homologous Proteins for effective functional annotation of proteins
Future Research
Applications of Supercomputers in Bioinformatics.
Using Computational Data Mining Models to Determine Protein Folding.
Enhancement of Instructional Technology by using Feedback Support Systems for the Access Grid Framework and Data Mining.
Using Computational Data Mining Models to Determine Protein Folding.
Enhancement of Instructional Technology by using Feedback Support Systems for the Access Grid Framework and Data Mining.
Industrial Relevance
Indian Space Research Organization (ISRO), Bangalore (2003-2004).
Involved in the Design, Development and Development of an "Automation of a testing environment for electronic components" used in the building of Satellites. An efficient RDBMS (back-end) designed in ORACLE 8i to keep track of successfully tested components and the rollback of failed components from manufacturer to Satellite
Involved in the Design, Development and Development of an "Automation of a testing environment for electronic components" used in the building of Satellites. An efficient RDBMS (back-end) designed in ORACLE 8i to keep track of successfully tested components and the rollback of failed components from manufacturer to Satellite
Other Expertise
Access Grid - Design, Set up and Management, Louisiana Tech University, Ruston, LA.(2004-2006)
Data Mining Reseach Laboratory, Lab Administrator and Manager. (2004-2006)
Data Mining Reseach Laboratory, Lab Administrator and Manager. (2004-2006)
Previous Positions
2004-2008, Research Assistant,
Louisiana Tech University,
College of Engineering and Science,
Computer Science
Profile Details
Last Updated: 12/15/2009
COS Expertise ID #1225857
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