Dr. Mark B. Roth

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Fred Hutchinson Cancer Research Center
Roth Lab
Basic Sciences
MemberAppointed: 1989
University of Washington
School of Medicine
Biochemistry
Adjunct FacultyAppointed: 1996
Professional Headshot of Mark B. Roth

Mailing Address

Fred Hutchinson Cancer Research Center
1100 Fairview Avenue North
P.O. Box 19024
A3-015
Seattle, Washington 98109-1024
United States

Contact Information

Phone: (206) 667-5602
Fax: (206) 667-5939
mroth@fhcrc.org
http://www.fhcrc.org/science/basic/labs/roth/

Expertise and Research Interests

Metabolic Flexibility and Suspended Animation:

Our work in suspended animation derives from the fact that many animals exhibit what we call "metabolic flexibility," the ability to dial down their respiration and heartbeat and, in effect, "turn themselves off" in response to physical or environmental stress. Mammalian examples include hibernation - from ground squirrels to bears - as well as estivation (quiescence in response to heat) and embryonic diapause, a pause in embryonic development found in about 70 species of mammals. Meanwhile, many invertebrates can go dormant for days, months, and even years before reanimating. Finally, germ and somatic stem cells are well known to exit the cell cycle for extended periods of time and to re-enter only when it is favorable for the organism.

Our approach to understanding this flexibility has been to develop the means to stop animals for given periods of time and then reanimate them to normal function. We use the term suspended animation to refer to a state where all observable life processes (using high resolution light microscopy) are stopped: the animals do not move nor breathe and the heart does not beat. We have found that we are able to put a number of animals (yeast, nematodes, drosophila, frogs, and zebrafish) into a state of suspended animation for up to 24 hours through one basic technique: reducing the concentration of oxygen.

By examining the precise oxygen tensions needed to induce suspended animation, we also found discrete and lethal oxygen tensions exist just above the oxygen level that enables suspended animation. In other words, there is a range of oxygen levels that is too low to support life, but going below that causes the animals to suspend. We hypothesized that perhaps we could prevent death in low oxygen situations by adding agents that effectively inhibit oxygen utilization and induce suspended animation.

Carbon monoxide, a well-known gas, is extremely toxic because it does exactly that: binds to sites where oxygen binds in the body. We found that we can successfully put nematodes into a state of suspended animation using carbon monoxide, and these results with invertebrate systems encouraged us to explore other systems and agents.

Using another highly toxic gas, hydrogen sulfide, we found we can reversibly reduce the metabolic rate of mice: exposed to 80 ppm of hydrogen sulfide, mice enter into what we call a "hibernation-like" state, where their core temperature can be reduced as much as 11 degrees and their metabolic rate as judged by carbon dioxide production and oxygen consumption drops 10-fold. We've kept the animals in this state for 6 hours and they recover completely.

Our success in altering the metabolic rate of these mammals has given us the tools to pursue several promising lines of research, including whether it might be possible to "suspend" human organs (for transplant) or to "buy time" for human patients in trauma.

Chromosome Segregation:

My lab for many years has focused on the cell biology of the kinetochore in C. elegans. Our work on this dynamic structure required for accurate chromosome segregation during mitosis has provided detailed metrics for our work on suspended animation.

We have defined a number of genes that encode proteins required for the assembly of the kinetochore and studied the roles they play in mitosis. Using antibodies specific for these kinetochore components we have found that several of the proteins become reorganized and separate from the kinetochore when the chromosomes move toward the center of the cell at metaphase. Surprisingly, these proteins still associate with the chromosomes but now form a network on the poleward faces of the chromosomes. Using loss of function mutants we found that this network is required to enable adjacent chromosomes on the metaphase plate to interact with one another. In the absence of these reorganized kinetochore proteins the chromosomes fail to move as a unit to the poles and instead move individually leading to multiple nuclei reforming around the chromosomes as they exit mitosis.

Diagnostics:

Our work in human diagnostics has focused on the development of a test for autoimmune disease.

Anti-SR Systemic Lupus Erythematosus (SLE) Test:

The SLE test grew out of our previous work on the biochemistry of SR proteins, a family of conserved phosphoproteins proteins we identified twelve years ago. We found SR proteins are required for the regulation of alternative pre-mRNA splicing, but also found that they are autoantigens in patients suffering from SLE. Using this information we developed a new diagnostic test for lupus and met the criteria established by the Food and Drug Administration to manufacture and distribute this test in the United States and the test is currently being prepared for market distribution. This test improves the ability for physicians to accurately diagnose patients with SLE, a disease that is notoriously difficult to diagnose. Without an accurate diagnosis many patients suffer the symptoms for years unable to access appropriate care or therapies.

Keywords

COS Keywords:

Biochemistry, Biosynthesis, Cancer Or Carcinogenesis, Cell Biology, Cell Differentiation, Mutation, RNA.

Honors and Awards

2007, MacArthur Fellow, John D. and Catherine T. MacArthur Foundation

Publications

  • Chan K, Roth MB (Aug 2008) Anoxia-induced suspended animation in budding yeast as an experimental paradigm for studying oxygen-regulated gene expression., Eukaryotic cell Abstract
  • Morrison ML, Blackwood JE, Lockett SL, Iwata A, Winn RK, Roth MB (Jul 2008) Surviving blood loss using hydrogen sulfide., The Journal of trauma, 65 (1), 183-8 Abstract
  • Miller DL, Roth MB (Dec 2007) Hydrogen sulfide increases thermotolerance and lifespan in Caenorhabditis elegans., Proceedings of the National Academy of Sciences of the United States of America, 104 (51), 20618-22 Abstract
  • Blackstone, E., Roth, M.B. (2007) Suspended Animation-Like State Protects Mice from Lethal Hypoxia, Shock, 27 (4), 370-372
  • Sundararajan, N., Mao, D., Chan, S., Koo, T.-W., Su, X., Sun, L., Zhang, J., Sung, K.-b., Yamakawa, M., Gafken, P.R., Randolph, T., McLerran, D., Feng, Z., Berlin, A.A., Roth, M.B. (2006) Ultrasensitive Detection and Characterization of Posttranslational Modifications Using Surface -Enhanced Raman Spectroscopy, Anal. Chem., 78 (11), 3543-3550
  • Blackstone, E.A., Morrison, M.L., Roth, M. B., Hydrogen Sulfide Induces a Suspended Animation-State in Mice, Science, 308(5721), 518, April 2005
  • Moore, L.L., Stanvitch, G., Roth, M.B., HCP-4/CENP-C Promotes the Prophase Timing of Centromere Resolution By Enabling the Centromere Association of HCP-6 in Caenorhabditis Elegans, Mol. Cell Bio., 25(7), 2583-2592, April 2005
  • Stear JH, Roth MB, The Caenorhabditis Elegans Kinetochore Reorganizes At Prometaphase and in Response to Checkpoint Stimuli., Molecular Biology of the Cell, 15(11), 5187-96, November 2004
  • Nystul TG, Roth MB, Carbon monoxide-induced suspended animation protects against hypoxic damage in Caenorhabditis elegans, Proceedings of the National Academy of Sciences of the United States of America, 101(24), 9133-6, June 2004
  • Nystul TG, Goldmark JP, Padilla PA, Roth MB, Suspended animation in C. elegans requires the spindle checkpoint, Science, 302(5647), 1038-41, November 2003 Abstract
  • Stear JH, Roth MB, Characterization of HCP-6, a C. elegans protein required to prevent chromosome twisting and merotelic attachment, Genes & Development, 16(12), 1498-508, June 2002 Abstract
  • Padilla PA, Nystul TG, Zager RA, Johnson AC, Roth MB, Dephosphorylation of cell cycle-regulated proteins correlates with anoxia-induced suspended animation in Caenorhabditis elegans, Molecular Biology of the Cell, 13(5), 1473-83, May 2002 Abstract
  • Frank DJ, Edgar BA, Roth MB, The Drosophila melanogaster gene brain tumor negatively regulates cell growth and ribosomal RNA synthesis, Development (Cambridge, England), 129(2), 399-407, January 2002
  • Padilla PA, Roth MB, Oxygen deprivation causes suspended animation in the zebrafish embryo, Proceedings of the National Academy of Sciences of the United States of America, 98(13), 7331-5, June 2001
  • Moore LL, Roth MB, HCP-4, a CENP-C-like protein in Caenorhabditis elegans, is required for resolution of sister centromeres, Journal of Cell Biology, 153(6), 1199-208, June 2001 Abstract
  • Neugebauer KM, Merrill JT, Wener MH, Lahita RG, Roth MB, SR proteins are autoantigens in patients with systemic lupus erythematosus. Importance of phosphoepitopes, Arthritis and Rheumatism, 43(8), 1768-78, August 2000 Abstract
  • Tuma RS, Roth MB, Induction of coiled body-like structures in Xenopus oocytes by U7 snRNA, Chromosoma, 108(6), 337-44, November 1999 Abstract
  • Moore LL, Morrison M, Roth MB, HCP-1, a protein involved in chromosome segregation, is localized to the centromere of mitotic chromosomes in Caenorhabditis elegans, Journal of Cell Biology, 147(3), 471-80, November 1999 Abstract
  • Stark JM, Cooper TA, Roth MB, The relative strengths of SR protein-mediated associations of alternative and constitutive exons can influence alternative splicing, Journal of Bioligical Chemistry, 274(42), 29838-42, October 1999 Abstract
  • Buchwitz BJ, Ahmad K, Moore LL, Roth MB, Henikoff S, A histone-H3-like protein in C. elegans, Nature, 401(6753), 547-8, October 1999 Abstract
  • Frank DJ, Roth MB, ncl-1 is required for the regulation of cell size and ribosomal RNA synthesis in Caenorhabditis elegans, Journal of Cell Biology, 140(6), 1321-9, March 1998 Abstract
  • Stark JM, Bazett-Jones DP, Herfort M, Roth MB, SR proteins are sufficient for exon bridging across an intron, Proceedings of the National Academy of Sciences (USA), 95(5), 2163-8, March 1998 Abstract
  • Neugebauer KM, Roth MB, Transcription units as RNA processing units, Genes & Development, 11(24), 3279-85, December 1997 Abstract
  • Morrison M, Harris KS, Roth MB, smg mutants affect the expression of alternatively spliced SR protein mRNAs in Caenorhabditis elegans, Proceedings of the National Academy of Sciences of the United States of America, 94(18), 9782-5, September 1997
  • Neugebauer KM, Roth MB, Distribution of pre-mRNA splicing factors at sites of RNA polymerase II transcription, Genes & Development, 11(9), 1148-59, May 1997 Abstract
  • Ramchatesingh J, Zahler AM, Neugebauer KM, Roth MB, Cooper TA, A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer, Molecular and Cellular Biology, 15(9), 4898-907, September 1995 Abstract
  • Roth MB, Spheres, coiled bodies and nuclear bodies, Current Opinion in Cell Biology, 7(3), 325-8, June 1995 Abstract
  • Neugebauer KM, Stolk JA, Roth MB, A conserved epitope on a subset of SR proteins defines a larger family of Pre-mRNA splicing factors, Journal of Cell Biology, 129(4), 899-908, May 1995 Abstract
  • Zahler AM, Roth MB, Distinct functions of SR proteins in recruitment of U1 small nuclear ribonucleoprotein to alternative 5' splice sites, Proceedings of the National Academy of Sciences of the United States of America, 92(7), 2642-6, March 1995
  • Tuma RS, Stolk JA, Roth MB, Identification and characterization of a sphere organelle protein, Journal of Cell Biology, 122(4), 767-73, August 1993 Abstract
  • Zahler AM, Neugebauer KM, Stolk JA, Roth MB, Human SR proteins and isolation of a cDNA encoding SRp75, Molecular and Cellular Biology, 13(7), 4023-8, July 1993 Abstract
  • Zahler AM, Neugebauer KM, Lane WS, Roth MB, Distinct functions of SR proteins in alternative pre-mRNA splicing, Science, 260(5105), 219-22, April 1993 Abstract
  • Zahler AM, Lane WS, Stolk JA, Roth MB, SR proteins: a conserved family of pre-mRNA splicing factors, Genes & Development, 6(5), 837-47, May 1992 Abstract
  • Mayeda A, Zahler AM, Krainer AR, Roth MB, Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing, Proceedings of the National Academy of Sciences of the United States of America, 89(4), 1301-4, February 1992
  • Roth MB, Zahler AM, Stolk JA, A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription, Journal of Cell Biology, 115(3), 587-96, November 1991 Abstract
  • Roth MB, Murphy C, Gall JG, A monoclonal antibody that recognizes a phosphorylated epitope stains lampbrush chromosome loops and small granules in the amphibian germinal vesicle, Journal of Cell Biology, 111(6 Pt 1), 2217-23, December 1990 Abstract
  • Roth MB, Gall JG, Targeting of a chromosomal protein to the nucleus and to lampbrush chromosome loops, Proceedings of the National Academy of Sciences of the United States of America, 86(4), 1269-72, February 1989
  • Roth MB, Gall JG, Monoclonal antibodies that recognize transcription unit proteins on newt lampbrush chromosomes, Journal of Cell Biology, 105(3), 1047-54, September 1987 Abstract
  • Roth MB, Re.: A new method for detection of radioimmunoassays, Journal of Immunological Methods, 92(2), 287-8, September 1986 Abstract
  • Roth M, Lin M, Prescott DM, Large scale synchronous mating and the study of macronuclear development in Euplotes crassus, Journal of Cell Biology, 101(1), 79-84, July 1985 Abstract
  • Roth M, Prescott DM, DNA intermediates and telomere addition during genome reorganization in Euplotes crassus, Cell, 41(2), 411-7, June 1985 Abstract
  • Roth, MB, Prescott, DM, DNA reorganization during macronuclear development in a ciliate, IN: Genome Reorganization, 05-219, 1985
  • Sprague KU, Roth MB, Manning RF, Gage LP, Alleles of the fibroin gene coding for proteins of different lengths, Cell, 17(2), 407-13, June 1979 Abstract
  • Morrison, M., Blackwood, J. E., Lockett, S.L., Iwata, A., Winn, R.K., Roth, M.B., Surviving blood loss using hydrogen sulfide, Journal of Trauma, Injury, Infection and Critical Care, In Press

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Last Verified: 9/9/2008

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